Publications

gaps paper

McGee, K.M., Robinson, C.V., & Hajibabaei, M. (2019). Gaps in DNA-Based biomonitoring across the globe. Frontiers in Ecology and Evolution, 7, 337. https://doi.org/10.3389/fevo.2019.00337


Hajibabaei et al 2011

Hajibabaei, M., Shokralla, S., Zhou, X., Singer, G.A.C., & Baird, D.J. (2011). Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos. PLoS ONE, 6(4): e17497. https://doi.org/10.1371/journal.pone.0017497.


Baird & Hajibabaei 2012

Baird, D.J., & Hajibabaei, M. (2012). Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next‐generation DNA sequencing. Molecular Ecology, 21(8), 2039-2044. https://doi.org/10.1111/j.1365-294X.2012.05519.x.


Shokralla et al 2012

Shokralla, S., Spall, J.L., Gibson, J.F., & Hajibabaei, M. (2012). Next-generation sequencing technologies for environmental DNA research. Molecular Ecology, 21(8), 1794-1805. https://doi.org/10.1111/j.1365-294X.2012.05538.x.


Hajibabaei et al 2012

Hajibabaei, M., Spall, J.L., Shokralla, S., & van Konynenburg, S. (2012). Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol. BMC Ecology, 12, 28.


 

Gibson et al 2015

Gibson, J.F., Shokralla, S., Curry, C., Baird, D.J., Monk, W.A., King, I., & Hajibabaei, M. (2015). Large-scale biomonitoring of remote and threatened ecosystems via high-throughput sequencing. PLoS ONE 10(10): e0138432. https://doi.org/10.1371/journal.pone.0138432.


Hajibabaei et al 2016

Hajibabaei, M., Baird, D.J., Fahner, N.A., Beiko, R., & Golding, G.B. (2016). A new way to contemplate Darwin’s tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring. Philosophical Transactions of the Royal Society B, 371, 20150330. http://dx.doi.org/10.1098/rstb.2015.0330.


Emilson et al 2017

Emilson, C.E., Thompson, D.G., Venier, L.A., Porter, T.M., Swystun, T., Chartrand, D., Capell, S., & Hajibabaei, M. (2017). DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient. Scientific Reports, 7, 12777. DOI:10.1038/s41598-017-13157-x.


Hajibabaei et al 2019.jpg

Hajibabaei, M., Porter, T.M., Robinson, C.V., Baird, D.J., Shokralla, S., & Wright, M. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. BioRxiv. Submitted 2019.

 

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